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Strand 1: Organisation of Life

Characteristics of Life

The defining features of living things, viruses, and the domains and classification of life.

1.1 Characteristics of Living Things

In brief:All living organisms share certain characteristics that distinguish them from non-living things. These characteristics form the basis for defining life.

All living organisms share 8 characteristics that distinguish them from non-living things. The mnemonic MRS NERG can help you remember them:

Movement - response to stimuli by changing position
Respiration - releasing energy from food molecules
Sensitivity - detecting and responding to changes in the environment
Nutrition - obtaining food for energy, growth, and repair
Excretion - removal of metabolic waste products
Reproduction - producing new individuals of the same species
Growth - permanent increase in size and complexity

Plus Organisation: all living things are made of cells arranged in levels of increasing complexity.

Viruses challenge the definition of life: they have DNA or RNA and can replicate, but they cannot reproduce independently, carry out metabolism, or respond to stimuli. They need a host cell to reproduce.

Animal cell

All living things are made of cells - the basic unit of life

Wikimedia Commons (CC)

diagram

Levels of Organisation

Cell
Tissue
Organ
Organ System
Organism
table

MRS NERG - Characteristics of Life

LetterCharacteristicMeaningExample
MMovementChanging position in response to stimuliPlant growing towards light
RRespirationReleasing energy from foodGlucose → CO₂ + H₂O + ATP
SSensitivityResponding to environmentPupil dilating in dark
NNutritionObtaining foodPhotosynthesis / eating
EExcretionRemoving metabolic wasteCO₂ from lungs, urea from kidneys
RReproductionProducing offspringSexual or asexual
GGrowthIncrease in size/complexityCell division

Key Points

  • 1The characteristics of life: Organisation, Growth, Response, Metabolism, Respiration, Nutrition, Excretion, Reproduction.
  • 2Organisation: living things are made of cells arranged in increasing complexity.
  • 3Metabolism: all the chemical reactions occurring in an organism (anabolism + catabolism).
  • 4Viruses have DNA or RNA and a protein coat but cannot reproduce independently.
  • 5Viruses are difficult to classify as living or non-living - they need a host cell to replicate.

Learning Outcomes

  • Outline the characteristics of living things
  • Discuss the difficulty of defining viruses, their economic and medical importance

Domains & Classification

In brief:Classification is the organisation of living things into groups based on shared characteristics. Modern classification uses three domains based on genetic evidence.

Classification is the organisation of living things into groups based on shared characteristics. Modern classification uses three domains based on genetic (DNA) evidence.

The Three Domains (proposed by Carl Woese in 1990):

1. Bacteria - prokaryotic, most diverse and abundant. E.g. E. coli, Streptococcus
2. Archaea - prokaryotic, often found in extreme environments (hot springs, salt lakes)
3. Eukaryota - all organisms with membrane-bound nuclei: Protista, Fungi, Plantae, Animalia

Binomial Nomenclature (devised by Linnaeus): every species has a two-part Latin name - Genus species. E.g. Homo sapiens, Escherichia coli. The genus is capitalised, both italicised.

Taxonomic hierarchy: Domain → Kingdom → Phylum → Class → Order → Family → Genus → Species

table

The Three Domains of Life

FeatureBacteriaArchaeaEukaryota
Cell typeProkaryoticProkaryoticEukaryotic
NucleusNoNoYes (membrane-bound)
Cell wallPeptidoglycanPseudopeptidoglycanVaries (cellulose/chitin/none)
HabitatsEverywhereExtreme environmentsEverywhere
ExamplesE. coliMethanogensHumans, fungi, plants
process

Taxonomic Hierarchy (King Philip Came Over For Good Spaghetti)

Domain
Kingdom
Phylum
Class
Order
Family
Genus
Species

Key Points

  • 1Three Domains: Archaea, Bacteria, Eukaryota - based on genetic characteristics.
  • 2Six Kingdoms: Bacteria, Archaea, Protista, Fungi, Plantae, Animalia.
  • 3Prokaryotic cells (Bacteria, Archaea): no membrane-bound nucleus.
  • 4Eukaryotic cells (Protista, Fungi, Plantae, Animalia): membrane-bound nucleus and organelles.
  • 5Phylogeny: classification based on evolutionary development - genus and species.
  • 6Classification systems evolve as new evidence (e.g. DNA analysis) emerges.

Learning Outcomes

  • Outline the domains of life system based on genetic characteristics
  • Use classification principles to identify and classify living things in known and unknown contexts; outline the importance of classification systems in biology

3. Domain-Based Phylogenetic Classification

In brief:Modern classification groups organisms by shared ancestry, worked out from gene sequences, into three domains: Bacteria, Archaea and Eukarya.

Phylogenetic classification groups organisms according to their evolutionary relationships rather than their appearance. Relationships are worked out by comparing gene and protein sequences, especially ribosomal RNA genes, which change very slowly and are found in every organism.

The three domains

Carl Woese's rRNA comparisons showed that the prokaryotes are not one group. Life is now divided into three domains:

DomainCell typeKey features
BacteriaProkaryoticPeptidoglycan cell wall; found almost everywhere
ArchaeaProkaryoticNo peptidoglycan; distinct membrane lipids; many live in extreme conditions
EukaryaEukaryoticNucleus and membrane-bound organelles; protists, fungi, plants, animals

Archaea are genetically closer to Eukarya than to Bacteria, which is why the tree branches as it does. The full hierarchy runs domain, kingdom, phylum, class, order, family, genus, species, and each organism is given a two-part binomial name such as Homo sapiens.

Reading a phylogenetic tree

Each branch point is a common ancestor, and the shorter the distance back to a shared branch point, the more closely related two organisms are. Because sequence data is objective and can be reanalysed by anyone, trees are revised as more genomes are sequenced. Similar appearance can be misleading: unrelated species can look alike through convergent evolution, but their DNA still tells them apart.

svg

The three-domain tree of life

Last universal common ancestor Eukarya nucleus, membrane-bound organelles Archaea no peptidoglycan, extreme habitats Bacteria peptidoglycan cell wall shared ancestor of Archaea and Eukarya Branch points are based on rRNA gene sequence differences, not on appearance. Domain → Kingdom → Phylum → Class → Order → Family → Genus → Species

Key Points

  • 1Phylogenetic classification groups organisms by evolutionary relationship, using DNA and rRNA sequences
  • 2Three domains: Bacteria, Archaea and Eukarya
  • 3Archaea lack peptidoglycan and are more closely related to Eukarya than to Bacteria
  • 4Branch points on a tree represent common ancestors
  • 5Trees are revised as new sequence data becomes available

Learning Outcomes

  • Describe domain-based phylogenetic classification systems and how they are derived from sequence data

4. Levels of Organisation and What Makes Something Alive

In brief:Life is organised in levels from atoms up to the biosphere, and each living thing carries out the same set of life processes.

Biology studies life at many levels of organisation. Each level is built from the one below it, and each new level shows properties the level below does not have. A chloroplast cannot survive alone, a leaf cell can photosynthesise, and only a whole ecosystem cycles nutrients.

The life processes

An organism is alive if it carries out all of these:

  • Nutrition - obtaining food or making it. Autotrophic organisms make their own food (plants, algae, some bacteria); heterotrophic organisms take it in ready made (animals, fungi, most bacteria).
  • Respiration - releasing energy from food as ATP in every living cell.
  • Excretion - removing the waste products of metabolism, such as CO₂ and urea.
  • Response - detecting and reacting to stimuli, which keeps the organism alive in a changing environment.
  • Growth - a permanent increase in size and dry mass, from cell division and cell enlargement.
  • Reproduction - producing new individuals, asexually or sexually, so the species continues.
  • Organisation - all living things are made of one or more cells, the basic unit of life.

Metabolism and homeostasis

Metabolism is the sum of all chemical reactions in an organism. Anabolic reactions build large molecules and use energy (photosynthesis, protein synthesis); catabolic reactions break molecules down and release energy (respiration, digestion). Every one of these reactions is controlled by an enzyme.

Homeostasis is the maintenance of a stable internal environment despite changes outside. Body temperature, blood glucose, water balance and blood pH are all held within narrow limits, usually by negative feedback: a change is detected, a response is triggered that reverses the change, and conditions return to the set point.

Common mistake

Cars use fuel and move, and crystals grow, but neither carries out all the life processes. To decide whether something is alive, check the full list, not one feature.

svg

Levels of biological organisation

Atom carbon, nitrogen Molecule glucose, DNA Organelle chloroplast Cell palisade cell Tissue mesophyll Organ leaf Organ system shoot system Organism oak tree Population all oak trees Community all species there Ecosystem wood + soil + climate Biosphere all life on Earth Each level is built from the one before it, and each level shows properties the level below does not.

Key Points

  • 1Levels of organisation run atom, molecule, organelle, cell, tissue, organ, organ system, organism, population, community, ecosystem, biosphere
  • 2Life processes: nutrition, respiration, excretion, response, growth, reproduction, organisation
  • 3Autotrophic organisms make their own food; heterotrophic organisms take it in
  • 4Metabolism = anabolic (building, uses energy) + catabolic (breaking down, releases energy)
  • 5Homeostasis keeps the internal environment stable, usually by negative feedback

Learning Outcomes

  • Describe the characteristics that distinguish living organisms from non-living things
  • Describe the levels of organisation in living systems
  • Explain the role of metabolism and homeostasis in maintaining life